Resources

Softwares

—————————————————————————————————————————————————————————————————————

PAGnet

A online resource which construct a genomic integrated regulatory network based on chromatin immunoprecipitation coupled with high-throughput sequencing (ChIP-seq) and transcriptome profiling (RNA-seq).

https://compbio-cityuhk.shinyapps.io/pagnet/

DeepCC

A deep learning-based framework for cancer classification. https://cityuhk-compbio.github.io/deepcc_online/

HTSanalyzeR2

A R pacakge for downstream analysis of high-throughput CRISPR/RNAi screens with interactive shiny report.

https://github.com/CityUHK-CompBio/HTSanalyzeR2

Tutorial website: https://htsanalyzer2.netlify.com/

Website

—————————————————————————————————————————————————————————————————————

Cityu-Bioinformatics

A website contains bioinformatic related tutorials, databases, tools and journals:

https://cityu-bioinformatics.netlify.com/

Servers

—————————————————————————————————————————————————————————————————————

Rstudio server:

Click here to access the Rstudio server in the Wang Lab.

Please contact xin.wang@cityu.edu.hk if you need an account.

Galaxy:

Click here to access the Galaxy server in the Wang Lab.

UCSC Genome Browser:

Click here to access the UCSC Genome Browser in the Wang Lab.

—————————————————————————————————————————————————————————————————————